Miscellaneous Projects
Summary Using fastqc, HISAT2, featureCounts, samtools, and Trimmomatic, an alignment pipeline was made for RNAseq data to the Chinese hamster ovary (CHO) genome. The annotation files were taken from NCBI. The workflow until the featureCounts step show’s an older annotation file. Note that the workflow is identical for the updated annotation file, but the updated …
Source Code: GitHub This notebook shows competency of regular expressions by applying regex to 75 questions created by LearnByExample on Github. The questions get more challenging as you approach the 75th question. Example 1 Example 2
This code is a set of scripts that were created while completing a C++ for programmers certificate. This is by no means a finished product, but rather this is to show basic competence in the C++ programming language. https://github.com/alexjimenez99/education-workflows